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Class CodonTable

Codon tables based on those from the NCBI. Inspired from BioPython IUPACData.py: https://github.com/biopython/biopython/blob/master/Bio/Data/CodonTable.py which is under the BSD 3-Clause License with Copyright 2000 Andrew Dalke

Note: only implemented a very small subset of BioPython functionality.

Hierarchy

  • CodonTable

Index

Constructors

Properties

Methods

Constructors

constructor

  • new CodonTable(id: number, name: string, altName: string, table: Record<string, string>, startCodons: string[], stopCodons: string[]): CodonTable

  • Parameters

    • id: number
    • name: string
    • altName: string
    • table: Record<string, string>
    • startCodons: string[]
    • stopCodons: string[]

    Returns CodonTable

Properties

altName

altName: string

id

id: number

name

name: string

startCodons

startCodons: string[]

stopCodons

stopCodons: string[]

table

table: Record<string, string>

Methods

Static rnaTableFromDNACodonTable

  • rnaTableFromDNACodonTable(id: number, name: string, altName: string, dnaCodonTable: CodonTable): CodonTable

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