Class SeqIO

General sequence Input and Output functions

export

Hierarchy

SeqIO

Index

Methods

Object literals

DEFAULT_SEQ_PROPERTIES

Methods

Static getRandomSetOfSequences

getRandomSetOfSequences(sequences: SeqRecord[], n: number): SeqRecord[]

- Defined in src/data/SeqIO.ts:67
Parameters
- sequences: SeqRecord[]
- n: number
Returns SeqRecord[]

Static parseFile

parseFile(fileText: string, fileType: SEQUENCE_FILE_TYPES, seqProperties?: Partial<object>): SeqRecord[]

- Defined in src/data/SeqIO.ts:20
Parameters
- fileText: string
- fileType: SEQUENCE_FILE_TYPES
- Optional seqProperties: Partial<object>
Returns SeqRecord[]

Object literals

Static DEFAULT_SEQ_PROPERTIES

DEFAULT_SEQ_PROPERTIES: object

alphabet

alphabet: undefined = undefined

ignoredCharacters

ignoredCharacters: never[] = []

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