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Interface IUMAPSequenceContainerProps

Hierarchy

  • object
    • IUMAPSequenceContainerProps

Index

Properties

allSequences

allSequences: SeqRecord[]

currentCells

currentCells: Set<number>

labelCategory

labelCategory: string

numIterationsBeforeReRender

numIterationsBeforeReRender: number

numSequencesToShow

numSequencesToShow: number

if the number of data points are too large, the container will randomly subsample points

showUploadButton

showUploadButton: boolean

Optional taxonomyText

taxonomyText: undefined | string

Text from taxonomy file - only valid when umap is showing sequences:

  1. tab delimited with each row being a sequence
  2. first row is a header with column names
  3. must contain columns 'seq_name': values matched to fasta sequence names
                     'phylum': the phylum of the organism the sequence originated from
                     'class': the class of the organism the sequence originated from

Methods

setCurrentCells

  • setCurrentCells(cells: number[]): void

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