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Class UMAPSequenceContainerClass<SS>

Type parameters

  • SS

Hierarchy

Index

Constructors

constructor

Properties

context

context: any

If using the new style context, re-declare this in your class to be the React.ContextType of your static contextType. Should be used with type annotation or static contextType.

static contextType = MyContext
// For TS pre-3.7:
context!: React.ContextType<typeof MyContext>
// For TS 3.7 and above:
declare context: React.ContextType<typeof MyContext>
see

https://reactjs.org/docs/context.html

props

props: Readonly<IUMAPSequenceContainerProps> & Readonly<object>

refs

refs: object

Type declaration

  • [key: string]: ReactInstance

state

Static Optional contextType

contextType: Context<any>

If set, this.context will be set at runtime to the current value of the given Context.

Usage:

type MyContext = number
const Ctx = React.createContext<MyContext>(0)

class Foo extends React.Component {
  static contextType = Ctx
  context!: React.ContextType<typeof Ctx>
  render () {
    return <>My context's value: {this.context}</>;
  }
}
see

https://reactjs.org/docs/context.html#classcontexttype

Methods

Optional UNSAFE_componentWillMount

  • UNSAFE_componentWillMount(): void

Optional UNSAFE_componentWillReceiveProps

Optional UNSAFE_componentWillUpdate

Optional componentDidCatch

  • componentDidCatch(error: Error, errorInfo: ErrorInfo): void
  • Catches exceptions generated in descendant components. Unhandled exceptions will cause the entire component tree to unmount.

    Parameters

    • error: Error
    • errorInfo: ErrorInfo

    Returns void

componentDidMount

  • componentDidMount(): void

componentDidUpdate

Optional componentWillMount

  • componentWillMount(): void

Optional componentWillReceiveProps

Optional componentWillUnmount

  • componentWillUnmount(): void
  • Called immediately before a component is destroyed. Perform any necessary cleanup in this method, such as cancelled network requests, or cleaning up any DOM elements created in componentDidMount.

    Returns void

Optional componentWillUpdate

equalityHammingDistance

  • equalityHammingDistance(seq1: number[], seq2: number[]): number
  • A special hamming distance function that is speed optimized for sequence comparisons. Assumes that sequences are passed with a single integer for each position. If the position is the same in each position then the distance is zero, otherwise the distance is one. The total distance is then the sum of each positional distance.

    Parameters

    • seq1: number[]
    • seq2: number[]

    Returns number

    the total distance between a pair of sequences.

forceUpdate

  • forceUpdate(callback?: undefined | function): void
  • Parameters

    • Optional callback: undefined | function

    Returns void

Protected getDataLabels

  • getDataLabels(): (undefined | ILabel)[]

Optional getSnapshotBeforeUpdate

  • Runs before React applies the result of render to the document, and returns an object to be given to componentDidUpdate. Useful for saving things such as scroll position before render causes changes to it.

    Note: the presence of getSnapshotBeforeUpdate prevents any of the deprecated lifecycle events from running.

    Parameters

    Returns SS | null

Protected onLabelChange

  • onLabelChange(event: SyntheticEvent, data: DropdownProps): void

Protected onTaxonomyUpload

  • onTaxonomyUpload(e: ChangeEvent<HTMLInputElement>): Promise<void>

Private parseTaxonomy

  • parseTaxonomy(taxonomyText: string): void

Private prepareData

  • prepareData(): void

render

  • render(): Element

Protected renderTaxonomyTrigger

  • renderTaxonomyTrigger(): Element

Protected renderTaxonomyUpload

  • renderTaxonomyUpload(): Element

setState

  • setState<K>(state: function | null | S | object, callback?: undefined | function): void
  • Type parameters

    • K: keyof IUMAPSequenceContainerState

    Parameters

    • state: function | null | S | object
    • Optional callback: undefined | function

    Returns void

Private setupSequenceAnnotation

  • setupSequenceAnnotation(allSequences: SeqRecord[], labelCategory: string): void

Optional shouldComponentUpdate

  • Called to determine whether the change in props and state should trigger a re-render.

    Component always returns true. PureComponent implements a shallow comparison on props and state and returns true if any props or states have changed.

    If false is returned, Component#render, componentWillUpdate and componentDidUpdate will not be called.

    Parameters

    Returns boolean

Object literals

Static defaultProps

defaultProps: object

currentCells

currentCells: Set<number> = Set<number>()

labelCategory

labelCategory: string = "class"

numIterationsBeforeReRender

numIterationsBeforeReRender: number = 1

numSequencesToShow

numSequencesToShow: number = 4000

setCurrentCells

setCurrentCells: EMPTY_FUNCTION = EMPTY_FUNCTION

showUploadButton

showUploadButton: boolean = false

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